mariadb: Upgrade to 10.3.13

Per https://mariadb.org/about/maintenance-policy/,
mariadb 5.5.x series only supported until next year
April 2020, so upgrade it to 10.3.13.

Remove some deprecated patches, add some
new patches to fix build failure and rework
two patches to avoid fuzz warnings.

Add -latomic to linker flags for armv5

Use -pthread to link for mussing  atomic symbols on arches e.g. riscv

Fixes issues like
ld.bfd: librocksdblib.a(memtable.cc.o):/usr/include/c++/9.0.1/bits/atomic_base.h:438: more undefined references to `__atomic_compare_exchange_1' follow

Fix build with musl

add libxml2 to depends

Fix build with clang

Signed-off-by: Mingli Yu <mingli.yu@windriver.com>
Signed-off-by: Khem Raj <raj.khem@gmail.com>

1 files changed, 13 insertions, 14 deletions

diff --git a/meta-oe/recipes-dbs/mysql/mariadb/configure.cmake-fix-valgrind.patch b/meta-oe/recipes-dbs/mysql/mariadb/configure.cmake-fix-valgrind.patch
index e97def6021..ac94279585 100644
--- a/meta-oe/recipes-dbs/mysql/mariadb/configure.cmake-fix-valgrind.patch
+++ b/meta-oe/recipes-dbs/mysql/mariadb/configure.cmake-fix-valgrind.patch
@@ -1,6 +1,6 @@
-From 5effba0d7d47071a3f1bca56823190d5a95bb1a6 Mon Sep 17 00:00:00 2001
+From 24e2b0edc2612acefcc48414bb6f0aeb086061a9 Mon Sep 17 00:00:00 2001
 From: Jackie Huang <jackie.huang@windriver.com>
-Date: Wed, 12 Nov 2014 03:09:10 -0500
+Date: Tue, 26 Feb 2019 23:57:06 -0800
 Subject: [PATCH] configure.cmake: fix valgrind
 
 Check valgrind headers only if WITH_VALGRIND is set.
@@ -15,27 +15,26 @@ PACKAGECONFIG to decide if valgrind is needed or not.
 Upstream-Status: Inappropriate [oe specific]
 
 Signed-off-by: Jackie Huang <jackie.huang@windriver.com>
+Signed-off-by: Mingli Yu <mingli.yu@windriver.com>
+
 ---
- configure.cmake | 4 ++--
- 1 file changed, 2 insertions(+), 2 deletions(-)
+ configure.cmake | 5 ++---
+ 1 file changed, 2 insertions(+), 3 deletions(-)
 
 diff --git a/configure.cmake b/configure.cmake
-index 0bd7bbe..51a098f 100644
+index 3cfc4b31..d017b3b3 100644
 --- a/configure.cmake
 +++ b/configure.cmake
-@@ -1047,10 +1047,10 @@ MARK_AS_ADVANCED(WITH_ATOMIC_LOCKS MY_ATOMIC_MODE_RWLOCK MY_ATOMIC_MODE_DUMMY)
+@@ -930,10 +930,9 @@ HAVE_GCC_C11_ATOMICS)
  
  IF(WITH_VALGRIND)
    SET(HAVE_valgrind 1)
-+  CHECK_INCLUDE_FILES("valgrind/memcheck.h;valgrind/valgrind.h"
-+  HAVE_VALGRIND)
- ENDIF()
- 
+-ENDIF()
+-
 -CHECK_INCLUDE_FILES("valgrind/memcheck.h;valgrind/valgrind.h" 
--  HAVE_VALGRIND)
++  CHECK_INCLUDE_FILES("valgrind/memcheck.h;valgrind/valgrind.h"
+   HAVE_VALGRIND_MEMCHECK_H)
++ENDIF()
  
  #--------------------------------------------------------------------
  # Check for IPv6 support
--- 
-2.0.0
-