repo: upgrade 2.39 -> 2.40

Changelog:
=========
-Don't log spam 'repo sync' by default
-tox: Remove pylint timeout
-Update commit-msg hook
-sync: Fix partial sync false positive
-repo: add repo main script's directory to PYTHONPATH.
-info: Handle undefined mergeBranch
-manifest_xml: support nested submanifests
-repo_logging: Ensure error details are printed
-repo: Use the worktree when checking the repo rev.
-git_superproject: tell git that superproject is bare
-Correctly handle schema-less URIs for remote fetch URL
-main: Log ManifestParseError exception messages
-repo: Remove unreachable code.
-cleanup: Update codebase to expect Python 3.6
-sync: PersistentTransport call parent init
-sync: TeeStringIO write should return int
-Correctly handle schema-less URIs for remote fetch URL
-main: Log ManifestParseError exception messages
-repo: Remove unreachable code.
-cleanup: Update codebase to expect Python 3.6

(From OE-Core rev: d345b1fb98e1e4181004b31996c3483a753b3eb1)

Signed-off-by: Wang Mingyu <wangmy@fujitsu.com>
Signed-off-by: Alexandre Belloni <alexandre.belloni@bootlin.com>
Signed-off-by: Richard Purdie <richard.purdie@linuxfoundation.org>

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